SNP Profiles of PLAYA ALTA 2 [VEN]   View Data

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 Key

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_Input profile
CTAGGGCCTTAACTTTCCCTAAAACTAA
1._PLAYA_ALTA_2_[VEN]
CTAGGGCCTTAACTTTCCCTAAAACTAA
2._GC-08-173-4-16
CTAGGGCCTTAACTTTCCCTAAAACTAA
3._GC-08-173-4-16
CTAGGGCCTTAACTTTCCCTAAAACTAA
4._GC-04-017-1-17
CTAGGGCCTTAACTTTCCCTAAAACTAA
5._GC-04-017-1-17
CTAGGGCCTTAACTTTCCCTAAAACTAA
6._GC-04-017-1-17
CTAGGGCCTTAACTTTCCCTAAAACTAA
7._GC-04-017-1-17
CTAGGGCCTTAACTTTCCCTAAAACTAA
8._GC-04-017-1-17
CTAGGGCCTTAACTTTCCCTAAAACTAA
9._PLAYA_ALTA_2_[VEN]
CTAGGGCCTTAACTTTCCCTAAAACTAA
10._PLAYA_ALTA_2_[VEN]
CTAGGGCCTTAACTTTCCCTAAAACTAA
11._PLAYA_ALTA_2_[VEN]
CTAGGGCCTTAACTTTCCCTAAAACTAA
12._PLAYA_ALTA_2_[VEN]
CTAGGGCCTTAACTTTCCCTAAAACTAA
13._PLAYA_ALTA_2_[VEN]
CTAGGGCCTTAACTTTCCCTAAAACTAA
14._PLAYA_ALTA_2_[VEN]
CTAGGGCCTTAACTTTCCCTAAAACTAA
15._PLAYA_ALTA_2_[VEN]
CTAGGGCCTTAACTTTCCCTAAAACTAA
16._GC-08-173-4-16
CTAGGGCCTTAACTTTCCCTAAAACTAA
17._GC-08-173-4-16
CTAGGGCCTTAACTTTCCCTAAAACTAA
18._PLAYA_ALTA_2_[VEN]
CTAGGGCCTTAACTTTCCCTAAAACTAA
19._PLAYA_ALTA_2_[VEN]
CTAGGGCCTTAACT_CCCTAAAACTAA
20._GC-08-173-4-16
CTAGGGCCTTAACT_CCCTAAAACTAA
21._PLAYA_ALTA_2_[VEN]
_AGGGCC_AACTTTCC__AACTAA
22._RUQ_232
__GG____TT_CT_AA_AA
23._RUQ_232
_AGGGCC___TT____CTAA
24._RUQ_232
AGAGCCGGAAAAAGAA__AAAAAGAA
25._MITC-000367
AGAGCCGGAAAAAGAA__AAAAAGAA
 1516171819202122232425262728
_Input profile
CCAAGGTTCCCGGGGGTTACCCTTCTCC
1._PLAYA_ALTA_2_[VEN]
CCAAGGTTCCCGGGGGTTACCCTTCTCC
2._GC-08-173-4-16
CCAAGGTTCCCGGGGGTTACCCTTCTCC
3._GC-08-173-4-16
CCAAGGTTCCCGGGGGTTACCCTTCTCC
4._GC-04-017-1-17
CCAAGGTTCCCGGGGGTTACCCTTCTCC
5._GC-04-017-1-17
CCAAGGTTCCCGGGGGTTACCCTTCTCC
6._GC-04-017-1-17
CCAAGGTTCCCGGGGGTTACCCTTCTCC
7._GC-04-017-1-17
CCAAGGTTCCCGGGGGTTACCCTTCTCC
8._GC-04-017-1-17
CCAAGGTTCCCGGGGGTTACCCTTCTCC
9._PLAYA_ALTA_2_[VEN]
CCAAGGTTCCCGGGGGTTACCCTTCTCC
10._PLAYA_ALTA_2_[VEN]
CCAAGGTTCCCGGGGGTTACCCTTCTCC
11._PLAYA_ALTA_2_[VEN]
CCAAGGTTCCCGGGGGTTACCCTTCTCC
12._PLAYA_ALTA_2_[VEN]
CCAAGGTTCCCGGGGGTTACCCTTCTCC
13._PLAYA_ALTA_2_[VEN]
CCAAGGTTCCCGGGGGTTACCCTTCTCC
14._PLAYA_ALTA_2_[VEN]
CCAAGGTTCCCGGGGGTTACCCTTCTCC
15._PLAYA_ALTA_2_[VEN]
CCAAGGTTCCCGGGGGTTACCCTTCTCC
16._GC-08-173-4-16
CCAAGGTTCCCGGGGGTTACCCTTCTCC
17._GC-08-173-4-16
CCAAGGTTCCCGGGGGTTACCCTTCTCC
18._PLAYA_ALTA_2_[VEN]
CCAAGGTTCCCGGGGGTTACCCTTCTCC
19._PLAYA_ALTA_2_[VEN]
CCAAGGTTCCCGGGGGTTACCCTTCTCC
20._GC-08-173-4-16
CCAAGGTTCCCGGGGGTTACCCTTCTCC
21._PLAYA_ALTA_2_[VEN]
CCAAGGTTCCCGGGGGTTACCCTTCTCC
22._RUQ_232
_____CGGGGG_ACCC__CC
23._RUQ_232
____CCCGGG_TTAACCTTCTCC
24._RUQ_232
GGAAGGAAGGCGCC_AAACCCAA_CC
25._MITC-000367
GGAAGGAAGGCGCC_AAACCCAA_CC
 293031323334353637383940  
_Input profile
GGGGATCCAGCCAACTGGCCTTGGX_XX_X
1._PLAYA_ALTA_2_[VEN]
GGGGATCCAGCCAACTGGCCTTGGX_XX_X
2._GC-08-173-4-16
GGGGATCCAGCCAACTGGCCTTGGX_XX_X
3._GC-08-173-4-16
GGGGATCCAGCCAACTGGCCTTGGX_XX_X
4._GC-04-017-1-17
GGGGATCCAGCCAACTGGCCTTGGX_XX_X
5._GC-04-017-1-17
GGGGATCCAGCCAACTGGCCTTGGX_XX_X
6._GC-04-017-1-17
GGGGATCCAGCCAACTGGCCTTGGX_XX_X
7._GC-04-017-1-17
GGGGATCCAGCCAACTGGCCTTGGX_XX_X
8._GC-04-017-1-17
GGGGATCCAGCCAACTGGCCTTGGX_XX_X
9._PLAYA_ALTA_2_[VEN]
GGGGATCCAGCCAACTGGCCTTGGX_XX_X
10._PLAYA_ALTA_2_[VEN]
GGGGATCCAGCCAACTGGCCTTGGX_XX_X
11._PLAYA_ALTA_2_[VEN]
GGGGATCCAGCCAACTGGCCTTGGX_XX_X
12._PLAYA_ALTA_2_[VEN]
GGGGATCCAGCCAACTGGCCTTGGX_XX_X
13._PLAYA_ALTA_2_[VEN]
GGGGATCCAGCCAACTGGCCTTGGX_XX_X
14._PLAYA_ALTA_2_[VEN]
GGGGATCCAGCCAACTGGCCTTGGX_XX_X
15._PLAYA_ALTA_2_[VEN]
GGGGATCCAGCCAACTGGCCTTGGX_XX_X
16._GC-08-173-4-16
GGGGATCCAGCCAACTGGCCTTGGX_XX_X
17._GC-08-173-4-16
GGGGATCCAGCCAACTGGCCTTGGX_XX_X
18._PLAYA_ALTA_2_[VEN]
GGGGATCCAGCCAACTGGCCTTGGX_XX_X
19._PLAYA_ALTA_2_[VEN]
GGGGATCCAGCCAACTGGCCTTGGX_XX_X
20._GC-08-173-4-16
GGGGATCCAGCCAACTGGCCTTGGX_XX_X
21._PLAYA_ALTA_2_[VEN]
GGGGATCCAG_AACTGGCCTTGGX_XX_X
22._RUQ_232
____AG____CC__X_XX_X
23._RUQ_232
GG_ATCCAGCCAACTGGCC__X_XX_X
24._RUQ_232
_GGATGGAGGGAAAGCCCCTTGGX_XX_X
25._MITC-000367
_GGATGGAGGGAAAGCCCCTTGGX_XX_X

Input profile: PLAYA_ALTA_2_[VEN]

 
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Mars Center for Cocoa Science, Brazil
Location: 4117 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

1._PLAYA_ALTA_2_[VEN]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8416 8
 Dapeng Zhang, 2016

2._PLAYA_ALTA_2_[VEN] GC-08-173-4-16

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

3._PLAYA_ALTA_2_[VEN] GC-08-173-4-16

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

4._PLAYA_ALTA_2_[VEN] GC-04-017-1-17

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP4
 Mars, 2018

5._PLAYA_ALTA_2_[VEN] GC-04-017-1-17

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._PLAYA_ALTA_2_[VEN] GC-04-017-1-17

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._PLAYA_ALTA_2_[VEN] GC-04-017-1-17

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._PLAYA_ALTA_2_[VEN] GC-04-017-1-17

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

9._PLAYA_ALTA_2_[VEN]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8416 11
 Dapeng Zhang, 2016

10._PLAYA_ALTA_2_[VEN]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8416 9
 Dapeng Zhang, 2016

11._PLAYA_ALTA_2_[VEN]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8416 7
 Dapeng Zhang, 2016

12._PLAYA_ALTA_2_[VEN]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4117 8 > FP
 Dapeng Zhang, 2016

13._PLAYA_ALTA_2_[VEN]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4117 7
 Dapeng Zhang, 2016

14._PLAYA_ALTA_2_[VEN]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4117 6
 Dapeng Zhang, 2016

15._PLAYA_ALTA_2_[VEN]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4117 5
 Dapeng Zhang, 2016

16._PLAYA_ALTA_2_[VEN] GC-08-173-4-16

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

17._PLAYA_ALTA_2_[VEN] GC-08-173-4-16

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

18._PLAYA_ALTA_2_[VEN]

identical
40 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: C0303
 Dapeng Zhang, 2016

19._PLAYA_ALTA_2_[VEN]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8416 10
 Dapeng Zhang, 2016

20._PLAYA_ALTA_2_[VEN] GC-08-173-4-16

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

21._PLAYA_ALTA_2_[VEN]

identical
35 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

22._PLAYA_ALTA_2_[VEN] RUQ_232

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

23._PLAYA_ALTA_2_[VEN] RUQ_232

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

24._PLAYA_ALTA_2_[VEN] RUQ_232

51.4 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

25._PLAYA_ALTA_2_[VEN] MITC-000367

51.4 %
35 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25